Publications

10. Graph embedding and transfer learning can help predict potential species interaction networks despite data limitations

Strydom, T., Bouskila, S., Banville, F., Barros, C., Caron, D., Farrell, M.J., Fortin, M.-J., Mercier, B., Pollock, L.J., Runghen, R., Dalla Riva, G.V., & Poisot. T. (2023)
Methods in Ecology and Evolution
article, repo

9. What constrains food webs? A maximum entropy framework for predicting their structure with minimal biases

Banville, F., Gravel, D., & Poisot, T. (2023)
PLoS Computational Biology
article, repo

8. Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web

Higino, G.T., Banville, F., Dansereau, G., Muñoz, N.R.F., Windsor, F., & Poisot, T. (2023)
PeerJ
article, repo

7. Ten simple rules for teaching yourself R

Lawlor, J., Banville, F., Forero-Muñoz, N.R.F, Hébert, K., Martínez-Lanfranco, J.A., Rogy, P., & MacDonald, A.A.M. (2022)
PLOS Computational Biology
article

6. Food web reconstruction through phylogenetic transfer of low-rank network representation

Strydom, T., Bouskila, S., Banville, F., Barros, C., Caron, D., Farrell, M.J., Fortin, M.-J., Hemming, V., Mercier, B., Pollock, L.J., Runghen, R., Dalla Riva, G.V., & Poisot, T. (2022)
Methods in Ecology and Evolution
article, code repo, article repo

5. A roadmap towards predicting species interaction networks (across space and time)

Strydom, T., Catchen, M.D., Banville, F., Caron, D., Dansereau, G., Desjardins-Proulx, P., Forero-Muñoz, N.R., Higino, G., Mercier, B., Gonzalez, A., Gravel, D., Pollock, L., & Poisot, T. (2021)
Philosophical Transactions of the Royal Society B: Biological Sciences
article, code repo, article repo

4. Computers Can Help us Find Raccoons and Other Living Creatures

Higino G., Forero N., Banville, F., Dansereau, G., & Poisot, T. (2021)
Front. Young Minds
article, repo

3. Mangal.jl and EcologicalNetworks.jl : Two complementary packages for analyzing ecological networks in Julia

Banville, F., Vissault, S., & Poisot, T. (2021)
Journal of Open Source Software
article, repo, Mangal.jl, EcologicalNetworks.jl

2. [Re] Chaos in a Three-Species Food Chain

Dansereau, G., Banville, F., Basque, E., MacDonald, A., & Poisot, T. (2020)
ReScience C
article, repo

1. Revisiting the Links-Species Scaling Relationship in Food Webs

MacDonald, A., Banville, F., & Poisot, T. (2020)
Patterns
article, repo

Preprints

1. Deciphering probabilistic species interaction networks

Banville, F., Strydom, T., Blyth, P., Brimacombe, C., Catchen, M.D., Dansereau, G., Higino, G., Malpas, T., Mayall, H., Norman, K., Gravel, D., and Poisot, T. (2024)
EcoEvoRxiv
preprint, repo